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  • ‹ Back to Matchmaker Gold yeast two-hybrid systems
  • Matchmaker Gold Yeast Two-Hybrid System
  • Make your own library for yeast two-hybrid screening
  • Mate and Plate yeast two-hybrid cDNA libraries
  • Aureobasidin A for improved selectable drug resistance in yeast
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Home › Learning centers › Protein research › Matchmaker Gold yeast two-hybrid systems › Aureobasidin A for improved selectable drug resistance in yeast

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Learn more about our MatchMaker Gold Y2H systems. Matchmaker Gold yeast two-hybrid systems
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Tech Note

Aureobasidin A: selectable drug resistance for yeast

  • Aureobasidin A resistance is a definitive selectable marker for yeast
  • Effectively reduces background in Matchmaker Gold yeast two-hybrid screens
  • Identifies genuine positives more easily, with fewer false positives
Introduction Low background with AbA screening AbA: ampicillin for yeast References

Introduction  

Aureobasidin A (AbA) is a potent and unique yeast antibiotic that kills S. cerevisiae at low concentrations (Takesako et. al. 1993). The drug is a cyclic multipeptide (Figure 1) that acts by inhibiting inositol phosphorylceramide synthase, an essential yeast enzyme. A mutant enzyme, encoded by the AUR1-C gene, confers resistance to AbA and can be used as a highly effective selectable marker that requires little to no optimization. Our optimized Matchmaker Gold Yeast Two-Hybrid System leverages this by including a reporter strain containing a stably-integrated AUR1-C gene, allowing for simple and rapid colony screening in yeast two-hybrid (Y2H) libraries using AbA selection.

Structure of Aureobasidin A

Figure 1. Structure of Aureobasidin A. Aureobasidin A (AbA; MW 1,100) is a cyclic depsipeptide antibiotic isolated from the fungus Aureobasidium pullulans R106. AbA inhibits the product of the yeast AUR1 gene (inositol phosphorylceramide synthase) and is toxic to S. cerevisiae at low concentrations (0.1 µg/ml). The gene product of a dominant mutant allele, AUR1-C, confers resistance to AbA and its expression can be used as a selectable marker.

Low background with AbA screening  

AbA selection virtually eliminates the high number of background colonies that often plague low-stringency primary screens that rely on nutritional markers alone (e.g., HIS3). Because AbA actually kills sensitive cells, rather than merely retarding their growth, AbA-based selection greatly favors the growth and identification of true positive clones. In general practice, a high percentage of clones that emerge from low-stringency primary screens using AbA selection are subsequently verified on high-stringency secondary screens that select for all four Matchmaker Gold reporters (AUR1-C, HIS3, ADE2, and MEL1).

AbA: ampicillin for yeast  

Many researchers have yearned for a yeast selection system similar to those used for E. coli or mammalian cells. In fact, AbA is used for yeast in a similar way as ampicillin and kanamycin are used for cloning in E. coli, or as G418 is used for selection of stably-transfected mammalian cell clones. AbA resistance is far easier to use in Y2H library screening than auxotrophic reporters, which often require additional optimization steps to achieve selective growth conditions.

If you wish to take your search for protein-protein interactions to the next level, look no further than AbA selection with the Matchmaker Gold Yeast Two-Hybrid System.

References  

Takesako, K. et al. Biological properties of aureobasidin A, a cyclic depsipeptide antifungal antibiotic. J. Antibiot. (Tokyo). 46, 1414–20 (1993).

Related Products

Cat. # Product Size Price License Quantity Details
630490 Make Your Own "Mate & Plate™" Library System 5 Rxns USD $1786.00

Mate & Plate Libraries are by far the easiest libraries to screen for protein-protein interactions using a GAL4 yeast two-hybrid system. Several Mate & Plate Libraries are available ready-made from Takara Bio. For libraries that are not available, this system provides the necessary components and a simple, highly efficient method to make your own Mate & Plate Library using SMART technology and the highly efficient homologous recombination machinery of Saccharomyces cerevisiae.

Notice to purchaser

Our products are to be used for Research Use Only. They may not be used for any other purpose, including, but not limited to, use in humans, therapeutic or diagnostic use, or commercial use of any kind. Our products may not be transferred to third parties, resold, modified for resale, or used to manufacture commercial products or to provide a service to third parties without our prior written approval.

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Library generation using n vivo recombination in S. cerevisiae. Mate & Plate Libraries are created via recombination between your cDNA and the Matchmaker prey vector pGADT7-Rec.

 Library generation using n vivo recombination in S. cerevisiae. Mate & Plate Libraries are created via recombination between your cDNA and the Matchmaker prey vector pGADT7-Rec.
Library generation using in vivo recombination in S. cerevisiae. Mate & Plate Libraries are created via recombination between your cDNA and the Matchmaker prey vector pGADT7-Rec. The homologues are generated by SMART cDNA synthesis. Colonies are pooled, mixed, and aliquoted into multiple vials. Each single 1 ml vial can be used for a two-hybrid screen.

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Mate & Plate libraries display broad insert representation

Mate & Plate libraries display broad insert representation
Mate & Plate libraries display broad insert representation. A human bone marrow library was made using the Make Your Own “Mate & Plate” Library System. Inserts from 15 randomly picked colonies were analyzed by yeast colony PCR using the Advantage 2 Polymerase Mix (Cat. No. 639201), and the Matchmaker AD LD-Insert Screening Amplimer Set (Cat. No. 630433). As seen in Lanes 1–15, every colony contained an insert of a different size. Lane M: 1 kb DNA ladder molecular weight marker.

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SMART cDNA synthesis generates cDNA ends with homology to pGADT7-Rec

SMART cDNA synthesis generates cDNA ends with homology to pGADT7-Rec
SMART cDNA synthesis generates cDNA ends with homology to pGADT7-Rec.

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630490: Make Your Own "Mate & Plate" Library System

630490: Make Your Own "Mate & Plate" Library System

Required Products

Cat. # Product Size Price License Quantity Details
630489 Matchmaker® Gold Yeast Two-Hybrid System Each USD $1180.00

Complete GAL4-based two-hybrid system to detect protein interactions. Yeast strain Y2HGold facilitates the elimination of many false positives that arise when screening an activation domain (AD) fusion library, because it contains four separate reporter genes that can be used to select for protein interactions. The system is also characterized by low background due to the Aureobasidin A resistance marker.

Documents Components You May Also Like Image Data

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The yeast two-hybrid principle

The yeast two-hybrid principle
The yeast two-hybrid principle. A bait protein interacts with the GAL4 recognition sequence (or promoter) upstream of a reporter gene. Transcription of the reporter is activated when a prey protein containing the GAL4 transcriptional activation domain interacts with the bait.

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Matchmaker Gold reporter genes

Matchmaker Gold reporter genes
Matchmaker Gold reporter genes. Yeast strain Y2HGold expresses 4 genes from 3 separate GAL4-responsive promoters in response to protein-protein interactions.

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Four reporters give the Matchmaker Gold Yeast Two-Hybrid System its high stringency

Four reporters give the Matchmaker Gold Yeast Two-Hybrid System its high stringency
Four reporters give the Matchmaker Gold Yeast Two-Hybrid System its high stringency. Interacting bait and prey fusion proteins drive the expression of four different reporters from three different GAL4-responsive promoters (M1, G1, and G2), which are stably integrated in the genome of the reporter strain, Y2H Gold. Aureobasidin A (AbA) resistance and the two auxotrophic reporters for histidine and adenine biosynthesis confer growth selection in the presence of AbA and on histidine- and adenine-deficient media, while the a-galactosidase reporter produces blue colonies in the presence of X-alpha-Gal.

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630489: Matchmaker Gold Yeast Two-Hybrid System

630489: Matchmaker Gold Yeast Two-Hybrid System
630489 Matchmaker® Gold Yeast Two-Hybrid System Each USD $1180.00

Complete GAL4-based two-hybrid system to detect protein interactions. Yeast strain Y2HGold facilitates the elimination of many false positives that arise when screening an activation domain (AD) fusion library, because it contains four separate reporter genes that can be used to select for protein interactions. The system is also characterized by low background due to the Aureobasidin A resistance marker.

Notice to purchaser

Our products are to be used for Research Use Only. They may not be used for any other purpose, including, but not limited to, use in humans, therapeutic or diagnostic use, or commercial use of any kind. Our products may not be transferred to third parties, resold, modified for resale, or used to manufacture commercial products or to provide a service to third parties without our prior written approval.

Documents Components You May Also Like Image Data

Back

The yeast two-hybrid principle

The yeast two-hybrid principle
The yeast two-hybrid principle. A bait protein interacts with the GAL4 recognition sequence (or promoter) upstream of a reporter gene. Transcription of the reporter is activated when a prey protein containing the GAL4 transcriptional activation domain interacts with the bait.

Back

Matchmaker Gold reporter genes

Matchmaker Gold reporter genes
Matchmaker Gold reporter genes. Yeast strain Y2HGold expresses 4 genes from 3 separate GAL4-responsive promoters in response to protein-protein interactions.

Back

Four reporters give the Matchmaker Gold Yeast Two-Hybrid System its high stringency

Four reporters give the Matchmaker Gold Yeast Two-Hybrid System its high stringency
Four reporters give the Matchmaker Gold Yeast Two-Hybrid System its high stringency. Interacting bait and prey fusion proteins drive the expression of four different reporters from three different GAL4-responsive promoters (M1, G1, and G2), which are stably integrated in the genome of the reporter strain, Y2H Gold. Aureobasidin A (AbA) resistance and the two auxotrophic reporters for histidine and adenine biosynthesis confer growth selection in the presence of AbA and on histidine- and adenine-deficient media, while the a-galactosidase reporter produces blue colonies in the presence of X-alpha-Gal.

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630489: Matchmaker Gold Yeast Two-Hybrid System

630489: Matchmaker Gold Yeast Two-Hybrid System
630494 Yeast Media Set 2 Each USD $365.00

Complete media sets for two-hybrid screening. Highest performing yeast media-hybrid system.

Package Contents: 

  • 2 pouches YPDA Broth
  • 1 pouch YPDA with Agar
  • 1 pouch SD/-Leu Broth
  • 1 pouch SD/-Leu with Agar
  • 1 pouch SD/-Trp Broth
  • 1 pouch SD/-Trp with Agar
  • 10 pouches SD/-Leu/-Trp with Agar
  • 1 pouches SD/-Ade/-His/-Leu/-Trp with Agar
Notice to purchaser

Our products are to be used for Research Use Only. They may not be used for any other purpose, including, but not limited to, use in humans, therapeutic or diagnostic use, or commercial use of any kind. Our products may not be transferred to third parties, resold, modified for resale, or used to manufacture commercial products or to provide a service to third parties without our prior written approval.

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630494: Yeast Media Set 2

630494: Yeast Media Set 2

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Yeast media pouches

Yeast media pouches
Yeast media pouches. Each ready-to-go pouch provides a precise amount of premixed media and supplements to make 0.5 L of broth or agar media. Yeast Media Sets contain a complete assortment of mixes for preparing eight specialized broth and agar media, and are designed to complement our advanced Matchmaker Gold Systems. The Yeast Media Set 2 Plus includes Aureobasidin A and X-alpha-Gal, as well as media.
630495 Yeast Media Set 2 Plus Each USD $775.00

The Yeast Media Set 2 Plus contains the media and supplements needed for yeast two-hybrid library screening with the Matchmaker Gold Yeast Two-Hybrid System (Cat. No. 630489). For the ready-to-go, preformulated pouches, just add water and autoclave according to the instructions provided in the Yeast Media Protocol-at-a-Glance: no measuring, mixing, or pH adjustments are required. Directions for the use of Aureobasidin A and X-alpha-Gal are provided in the Matchmaker Gold Yeast Two-Hybrid System User Manual.

Notice to purchaser

Our products are to be used for Research Use Only. They may not be used for any other purpose, including, but not limited to, use in humans, therapeutic or diagnostic use, or commercial use of any kind. Our products may not be transferred to third parties, resold, modified for resale, or used to manufacture commercial products or to provide a service to third parties without our prior written approval.

Documents Components Image Data

Back

The yeast two-hybrid principle

The yeast two-hybrid principle
The yeast two-hybrid principle. A bait protein interacts with the GAL4 recognition sequence (or promoter) upstream of a reporter gene. Transcription of the reporter is activated when a prey protein containing the GAL4 transcriptional activation domain interacts with the bait.

Back

Matchmaker Gold reporter genes

Matchmaker Gold reporter genes
Matchmaker Gold reporter genes. Yeast strain Y2HGold expresses 4 genes from 3 separate GAL4-responsive promoters in response to protein-protein interactions.

Back

Yeast media pouches

Yeast media pouches
Yeast media pouches. Each ready-to-go pouch provides a precise amount of premixed media and supplements to make 0.5 L of broth or agar media. Yeast Media Sets contain a complete assortment of mixes for preparing eight specialized broth and agar media, and are designed to complement our advanced Matchmaker Gold Systems. The Yeast Media Set 2 Plus includes Aureobasidin A and X-alpha-Gal, as well as media.
630466 Aureobasidin A 1 mg USD $259.00

Aureobasidin A (AbA) is a cyclic depsipeptide antibiotic, isolated from the filamentous fungus Aureobasidium pullulans R106, which is toxic to yeast at low concentrations (0.1–0.5 μg/ml). Sensitive species include Saccharomyces cerevisiae, Schizosaccharomyces pombe, Candida glabrata, Aspergillus nidulans and A. niger. AbA inhibits a yeast enzyme, inositol phosphorylceramide (IPC) synthase, whichis expressed from the AUR1 gene. Expression of a mutant gene, AUR1-C, in transformed yeast confers resistance to the drug.

Notice to purchaser

Our products are to be used for Research Use Only. They may not be used for any other purpose, including, but not limited to, use in humans, therapeutic or diagnostic use, or commercial use of any kind. Our products may not be transferred to third parties, resold, modified for resale, or used to manufacture commercial products or to provide a service to third parties without our prior written approval.

Documents Components Image Data

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Aureobasidin A (AbA) is a cyclic depsipeptide antibiotic that inhibits a yeast enzyme, inositol phosphorylceramide (IPC) synthase, expressed from the AUR1 gene

Aureobasidin A (AbA) is a cyclic depsipeptide antibiotic that inhibits a yeast enzyme, inositol phosphorylceramide (IPC) synthase, expressed from the AUR1 gene
Aureobasidin A (AbA) is a cyclic depsipeptide antibiotic that inhibits a yeast enzyme, inositol phosphorylceramide (IPC) synthase, expressed from the AUR1 gene. Expression of a mutant gene, AUR1-C, in transformed yeast confers resistance to the drug. It is this gene that is used in Matchmaker Gold systems as a reporter for protein interactions.

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630466: Aureobasidin A

630466: Aureobasidin A
630463 X-alpha-Gal 250 mg USD $371.00

X-α-Gal is a chromogenic substrate used to detect α-galactosidase activity. In yeast, α-galactosidase is a secreted reporter that is expressed from the MEL1 gene in response to GAL4 activation. α-galactosidase accumulates in the media and hydrolyses X-α-Gal causing yeast colonies to turn blue. X-α-Gal can be used with Matchmaker GAL4-based products to confirm protein interactions.

Notice to purchaser

Our products are to be used for Research Use Only. They may not be used for any other purpose, including, but not limited to, use in humans, therapeutic or diagnostic use, or commercial use of any kind. Our products may not be transferred to third parties, resold, modified for resale, or used to manufacture commercial products or to provide a service to third parties without our prior written approval.

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X-Alpha-Gal detects secreted alpha-galactosidase activity following a GAL4-based two-hybrid interactions in Y2HGold yeast patches and colonies

X-Alpha-Gal detects secreted alpha-galactosidase activity following a GAL4-based two-hybrid interactions in Y2HGold yeast patches and colonies
X-Alpha-Gal detects secreted alpha-galactosidase activity following a GAL4-based two-hybrid interactions in Y2HGold yeast patches and colonies.

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Yeast colonies that express alpha-galactosidase in response to a positive two-hybrid interaction turn blue when grown on media containing X-alpha-Gal

Yeast colonies that express alpha-galactosidase in response to a positive two-hybrid interaction turn blue when grown on media containing X-alpha-Gal
Yeast colonies that express alpha-galactosidase in response to a positive two-hybrid interaction turn blue when grown on media containing X-alpha-Gal.

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Takara Bio USA, Inc. provides kits, reagents, instruments, and services that help researchers explore questions about gene discovery, regulation, and function. As a member of the Takara Bio Group, Takara Bio USA is part of a company that holds a leadership position in the global market and is committed to improving the human condition through biotechnology. Our mission is to develop high-quality innovative tools and services to accelerate discovery.

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