- Single-cell NGS automation
- Reproductive health
- Bioinformatics tools
- Whole genome amplification
- Immune profiling
- Epigenetics and small RNA sequencing
- NGS accessories
Cogent NGS Immune Profiler Software
Cogent NGS Immune Profiler (CogentIP) is software designed to analyze sequence data stored in FASTQ files generated by Illumina sequencers from libraries prepared using certain Takara Bio immune profiling kits. After analyzing sequence data, the output CSV file can be uploaded to our web-based Cogent NGS Immune Viewer to quickly visualize immune profiling data and generate publication-ready figures.
The Immune Profiler software is free to use, according to the conditions of the End User License Agreement (EULA), by customers who have purchased one of the immune profiling kits:
- SMART-Seq Human BCR (with UMIs) (Cat. # 634776, 634777 & 634778)
- SMART-Seq Human TCR (with UMIs) (Cat. # 634779, 634780 & 634781)
- SMARTer Human BCR IgG IgM H/K/L Profiling Kit (Cat. # 634466 & 634467)
- SMARTer Human TCR a/b Profiling Kit v2 (Cat. # 634478 & 634479), or
- SMART-Seq Mouse TCR (with UMIs) (Cat. # 634814, 634815 & 634816)
Supported operating systems
- OS X (El Capitan v10.11 and up)
- CentOS 6 or higher, RedHat 7.5 or higher
- 16 GB RAM
- At least 100 GB of available hard drive space (dependent on input FASTQ file size)
Additional third-party software dependencies*
- Java 1.8–1.15 (Java SE 8–15)
- Python 3.6 or higher
*Not included with the software; must be downloaded and installed separately.
Additional product information
For use in conjunction with SMART-Seq Human BCR (with UMIs), SMART-Seq Human TCR (with UMIs), SMARTer Human BCR IgG IgM H/K/L Profiling Kit, SMARTer Human TCR a/b Profiling Kit v2, or SMART-Seq Mouse TCR (with UMIs).
More information is available in the Cogent NGS Immune Profiler v1.6 User Manual, or a streamlined protocol can be found in the Cogent NGS Immune Profiler v1.6 and Cogent NGS Immune Viewer v1.0 Quick Start Guide.
|Cogent NGS Immune Profiler Software version history|
|Version number||Release date||Notes|
|Cogent NGS Immune Profiler 1.6.1||2023-11-17||
|Cogent NGS Immune Profiler 1.6||2023-09-01|
|Cogent NGS Immune Profiler 1.5||2022-10-07||
|Cogent NGS Immune Profiler 1.0||2020-08-04|
Quickly visualize and prepare publication-ready figures of your immune profiling data using output files from the Cogent NGS Immune Profiler.
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