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Embgenix GT-omics Kit

Maximize biological discovery by gaining complete genome and transcriptome information from the same sample—down to single-cell resolution! The comprehensive Embgenix GT-omics Kit combines reproducible PicoPLEX whole-genome amplification (WGA), ultra-sensitive SMART cDNA synthesis, streamlined NGS library preparation, and user-friendly bioinformatics software for end-to-end multiomic analysis.

Ready to embark on your single-cell multiomics journey? Request a quote »

Maximize biological discovery by gaining a complete picture of genomic and transcriptional profiles from the same sample—down to single-cell resolution! The comprehensive Embgenix GT-omics Kit combines reproducible PicoPLEX whole-genome amplification (WGA), ultra-sensitive SMART cDNA synthesis, streamlined NGS library preparation, and user-friendly bioinformatics software for end-to-end multiomic analysis.

The Embgenix GT-omics Kit has been validated for trophectoderm biopsy samples of 3–5 cells and single-cell inputs. The workflow employs bead-based technology to physically separate RNA from DNA after cell lysis. First-strand cDNA synthesis is performed on-bead using SMART (Switching Mechanism at 5′ End of RNA Template) technology optimized for single-cell inputs to provide the highest sensitivity for transcript detection. PicoPLEX WGA technology ensures uniform and reproducible genome amplification from single-cell inputs.

Following cDNA synthesis and whole-genome amplification (WGA), a single-tube workflow without intermediate transfers or clean-up steps is used to prepare RNA-seq and DNA-seq libraries in parallel. The resulting NGS libraries are broadly compatible with Illumina sequencing platforms and allow for multiplexing of up to 96 samples (with one DNA-seq and one RNA-seq library per sample) per sequencing run. After sequencing, data can be analyzed with our easy-to-use Embgenix Analysis Software for CNV analysis and Cogent NGS tools (Analysis and Discovery) for differential expression analysis.

Ready to embark on your single-cell multiomics journey? Request a quote »

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Cat. # Product Size Price License Quantity Details
634819 Embgenix™ GT-omics Kit 96 Rxns Inquire for Quotation

License Statement

ID Number  
328 This Product is protected by one or more patents from the family consisting of: CH1604040, CH2374900, US8206913, US10837049, US11661628, US11492663, DE602004029560.4, DE602004049599.9, DK1604040, DK2374900, EP1604040, EP2374900, FR1604040, FR2374900, UK1604040, UK2374900, HK1089485, IE1604040, IE2374900, JP4773338, NL1604040, NL2374900, SE1604040, SE2374900 and any corresponding patents, divisionals, continuations, patent applications and foreign filings sharing common priority with the same family.
M54 This product is covered by the claims of U.S. Patent Nos. 7,704,713 and its foreign counterparts. 
326 This product is protected by U.S. Patents 7,803,550; 8,399,199; 8,728,737, 9,598,727, 10,196,686, 10,208,337, 11,072,823 and corresponding foreign patents. Additional patents are pending. For further license information, please contact a Takara Bio USA licensing representative by email at licensing@takarabio.com.
275 SMART-Seq2 Technology. This product is sold under exclusive license from Ludwig Institute of Cancer Research, Ltd. and is covered by US Patent No. 10266894, Japanese Patent No. 6336080, and European Patent No. 3036336, and pending U.S. patent application and/or pending claims of foreign counterparts. For license information, please contact a Takara Bio USA, Inc. licensing representative by e-mail at licensing@takarabio.com.
*

The Embgenix GT-omics Kit integrates bead-based DNA/RNA enrichment along with PicoPLEX whole-genome amplification (WGA), SMART-Seq cDNA synthesis technologies, and Takara Bio’s patented library preparation chemistry to generate high-quality Illumina-ready DNA-seq and RNA-seq libraries from the same sample for multiomic analysis. Each kit includes sufficient reagents and materials for processing 96 samples.

Notice to purchaser

Our products are to be used for Research Use Only. They may not be used for any other purpose, including, but not limited to, use in humans, therapeutic or diagnostic use, or commercial use of any kind. Our products may not be transferred to third parties, resold, modified for resale, or used to manufacture commercial products or to provide a service to third parties without our prior written approval.

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Embgenix GT-omics workflow

Embgenix GT-omics workflow

Embgenix GT-omics workflow. On Day 1, single cells or a trophectoderm (TE) biopsy consisting of 3–5 cells are lysed. Polyadenylated mRNA is captured using oligo(dT)-coated magnetic beads, while gDNA remains in the supernatant. cDNA is synthesized from bead-bound mRNA, and gDNA undergoes whole-genome amplification in separate tubes. On Day 2, RNA and DNA-seq libraries are prepared. Libraries are then pooled, sequenced, and analyzed using Embgenix Analysis Software and Cogent NGS tools.

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Single-cell CNV analysis using the Embgenix GT-omics Kit and Embgenix Analysis Software

Single-cell CNV analysis using the Embgenix GT-omics Kit and Embgenix Analysis Software

Single-cell CNV analysis using the Embgenix GT-omics Kit and Embgenix Analysis Software. The Embgenix GT-omics Kit was used to generate DNA-seq and RNA-seq libraries from six single-cell replicates derived from the well-characterized lymphoblastoid cell line, GM08331. DNA-seq libraries were sequenced at a depth of 1.5 million paired-end reads per cell and analyzed using Embgenix Analysis Software. Panel A. CNV plots displaying normalized counts of sequencing reads mapped to 1 Mb bins across each chromosome for each single-cell replicate. A segmental loss at chromosome 13 was identified in all replicates. Panel B. Sample classification, karyotype, and corresponding QC metrics for each replicate. Total reads denotes the total number of sequencing reads submitted for analysis, while informative reads represents the quantities of sequencing reads that were successfully mapped and used for CNV analysis. DLRS (derivative log ratio spread) quantifies signal noise, serving as a key metric for evaluating data suitability for accurate CNV analysis. QC Status indicates whether a sample met predefined thresholds for % informative reads and DLRS, ensuring data quality for downstream analysis.

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Single-cell transcriptome analysis using the Embgenix GT-omics Kit and Cogent NGS tools

Single-cell transcriptome analysis using the Embgenix GT-omics Kit and Cogent NGS tools

Single-cell transcriptome analysis using the Embgenix GT-omics Kit and Cogent NGS tools. RNA-seq data was produced for six replicates from the GM08331 cell line. The bar chart depicts the distributions of sequencing reads mapped to exonic, intronic, mitochondrial, rRNA, and intergenic regions for each sample. Gene count represents the number of unique genes detected for each replicate based on mapping of RNA-seq data.

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CNV analysis of TE biopsies using the Embgenix GT-omics Kit and Embgenix Analysis Software

CNV analysis of TE biopsies using the Embgenix GT-omics Kit and Embgenix Analysis Software

CNV analysis of TE biopsies using the Embgenix GT-omics Kit and Embgenix Analysis Software. Panel A. CNV plots displaying normalized counts of sequencing reads mapped to 1 Mb bins across each chromosome for four pairs of trophectoderm (TE) biopsy samples (with each pair of samples derived from the same embryo) and one control sample derived from the lymphoblastoid cell line GM08331. Aneuploid and mosaic calls are marked with arrows. Panel B. Automated sample classification, karyotype calls, and corresponding QC metrics for each sample analyzed. Alternative assay result refers to CNV calls obtained for each embryo via analysis of a separate biopsy sample with a comparable assay. Total reads denotes the total number of sequencing reads submitted for analysis, while informative reads represents the quantities of sequencing reads that were successfully mapped and used for CNV analysis. DLRS (derivative log ratio spread) and mean absolute pairwise difference (MAPD) quantify signal noise, serving as key metrics for evaluating data suitability for accurate CNV analysis. NME (noise metric euploid) is an additional noise metric intended for assessing assay performance across experiments. QC Status indicates whether a sample met predefined thresholds for informative reads and DLRS, ensuring data quality for downstream analysis.

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Transcriptome analysis of TE biopsy samples using the Embgenix GT-omics Kit and Cogent NGS tools

Transcriptome analysis of TE biopsy samples using the Embgenix GT-omics Kit and Cogent NGS tools

Transcriptome analysis of TE biopsy samples using the Embgenix GT-omics Kit and Cogent NGS tools. RNA-seq data was produced from trophectoderm (TE) biopsy samples across four embryos (two separate TE biopsies per embryo). Panel A. Distribution of sequencing reads mapped to exonic, intronic, mitochondrial, ribosomal, and intergenic regions for each TE biopsy sample. Gene count represents the number of unique genes detected for each replicate based on mapping of RNA-seq data. Panel B. Gene-body coverage of RNA-seq libraries generated from TE biopsy samples.

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Assessment of transcriptomic accuracy with synthetic RNA spike-in standards

Assessment of transcriptomic accuracy with synthetic RNA spike-in standards

Assessment of transcriptomic accuracy with synthetic RNA spike-in standards. External RNA Controls Consortium (ERCC) standards were combined with five-cell samples derived from the GM05067 cell line at two different dilution levels (low vs. high), generating four distinct RNA concentration conditions. Samples were processed in triplicate using the Embgenix GT-omics Kit and resulting RNA-seq libraries were sequenced, downsampled to 4 x 106 reads per sample, and analyzed using a custom analysis pipeline. Panel A. Pearson correlation matrix illustrating the relationships between measured quantities of the 92 synthetic ERCC spike-in RNA species across two formulations (Mix1 vs. Mix2). Panel B. Scatter plot comparing the measured fold changes of the 92 ERCC spike-in RNA species (Y-axis) to their expected fold changes (X-axis) at four different concentrations. Each dot represents an individual RNA species, with spiked-in concentrations indicated by the color gradient to the right of the plot.

*You must be logged in to a Purchasing Account in order to purchase these products online, since the purchase of these products may be restricted depending on your account type. Researchers at not-for-profit accounts receive a limited use license with their purchase of the product. Researchers at for-profit accounts must obtain a license prior to purchase. For details please contact licensing@takarabio.com.

Overview

  • Reveal how genomic variation correlates with differential gene expression at single-cell resolution to gain new biological insights
  • Eliminate the need for splitting precious source material or interpreting across datasets with a combined workflow for both genomic and transcriptomic analysis
  • Drive biomarker discovery with industry-leading PicoPLEX WGA and SMART cDNA synthesis technologies optimized for ultra-low or single-cell inputs
  • Prevent errors with a single-tube workflow for library prep following cDNA synthesis and whole-genome amplification
  • Process sequencing data quickly and easily with free-to-use Embgenix Analysis Software for CNV analysis and Cogent™ NGS Analysis Pipeline (CogentAP) and Cogent NGS Discovery Software (CogentDS) for differential expression analysis

More Information

Applications

  • Reproductive health technology
  • Oncology biomarker discovery

Additional product information

Please see the product's Certificate of Analysis for information about storage conditions, product components, and technical specifications. Please see the Product Components List to determine kit components. Certificates of Analysis and Product Components Lists are located under the Documents tab


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Takara Bio USA, Inc. provides kits, reagents, instruments, and services that help researchers explore questions about gene discovery, regulation, and function. As a member of the Takara Bio Group, Takara Bio USA is part of a company that holds a leadership position in the global market and is committed to improving the human condition through biotechnology. Our mission is to develop high-quality innovative tools and services to accelerate discovery.

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Takara Bio USA, Inc. provides kits, reagents, instruments, and services that help researchers explore questions about gene discovery, regulation, and function. As a member of the Takara Bio Group, Takara Bio USA is part of a company that holds a leadership position in the global market and is committed to improving the human condition through biotechnology. Our mission is to develop high-quality innovative tools and services to accelerate discovery.

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