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    • Cogent NGS Analysis Pipeline
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    • Cogent NGS Immune Viewer
    • SMART-Seq mRNA Long Read Demultiplexing for ONT Sequencing Data
    • Embgenix Analysis Software for Embgenix PGT-A Kit (RUO)
    • Embgenix Analysis Software for ESM Screen Kit
    • SMARTer Human scTCR Demultiplexer
    • SMART-Seq DE3 Demultiplexer
  • Immune profiling
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Home › Products › Next-generation sequencing › Bioinformatics tools

Next-generation sequencing

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      • Full-length mRNA-seq and RNA counting with UMIs
      • 3’ Differential Expression
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    • Total RNA-seq
      • SMART-Seq Total RNA-Seq Single Cell (ZapR Mammalian)
      • SMART-Seq Total RNA Pico Input with UMIs (ZapR Mammalian)
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      • General purpose library prep (50 pg–50 ng)
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      • Library prep with enzymatic fragmentation (100 pg–200 ng)
      • Library prep from ssDNA
    • Indexing reagents
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  • Single-cell NGS automation
    • Shasta Single Cell System
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      • Single-cell full-length transcriptome analysis
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  • Reproductive health
    • Embgenix PGT-A Kit (RUO)
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    • Embgenix GT-omics Kit
  • Bioinformatics tools
    • Cogent NGS Analysis Pipeline
    • Cogent NGS Discovery Software
    • Cogent NGS Immune Profiler
    • Cogent NGS Immune Viewer
    • SMART-Seq mRNA Long Read Demultiplexing for ONT Sequencing Data
    • Embgenix Analysis Software for Embgenix PGT-A Kit (RUO)
    • Embgenix Analysis Software for ESM Screen Kit
    • SMARTer Human scTCR Demultiplexer
    • SMART-Seq DE3 Demultiplexer
  • Immune profiling
    • Human repertoire
      • SMART-Seq Human BCR (with UMIs)
      • Human BCR profiling kit for Illumina sequencing
      • SMART-Seq Human TCR (with UMIs)
      • Human TCRv2 profiling kit for Illumina sequencing
      • Human scTCR profiling kit for Illumina sequencing
    • Mouse repertoire
      • SMART-Seq Mouse BCR (with UMIs)
      • SMART-Seq Mouse TCR (with UMIs)
      • Mouse BCR profiling kit for Illumina sequencing
      • Mouse TCR profiling kit for Illumina sequencing
  • NGS accessories
    • Unique Dual Index Kits
    • SeqAmp DNA Polymerase
    • Library Quantification Kit
    • Magnetic separator
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Bioinformatics tools

ICELL8 software offerings

As next-generation sequencing becomes more time- and cost-efficient, scaling up to hundreds of samples in a single experiment, it becomes vital to have software that can transform that information into a readily usable format for the scientist. Our easy-to-use solutions are designed for researchers with all levels of bioinformatics experience—from those analyzing their first sequencing dataset to experts in the field.

The products below represent our current portfolio of bioinformatics pipelines, designed to analyze sequencing results from specific reagent applications with programs tailored to accommodate the kit. Please view each product's page for more information about the pipeline and the Takara Bio kit it complements. See a list of supported applications.

Cogent NGS Analysis Pipeline

Cogent NGS Discovery Software

Cogent NGS Immune Profiler

Cogent NGS Immune Viewer

SMART-Seq mRNA Long Read Demultiplexing for ONT Sequencing Data

Embgenix Analysis Software for Embgenix PGT-A Kit (RUO)

Embgenix Analysis Software for ESM Screen Kit

SMARTer Human scTCR Demultiplexer

SMART-Seq DE3 Demultiplexer

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Takara Bio USA, Inc. provides kits, reagents, instruments, and services that help researchers explore questions about gene discovery, regulation, and function. As a member of the Takara Bio Group, Takara Bio USA is part of a company that holds a leadership position in the global market and is committed to improving the human condition through biotechnology. Our mission is to develop high-quality innovative tools and services to accelerate discovery.

FOR RESEARCH USE ONLY. NOT FOR USE IN DIAGNOSTIC PROCEDURES (EXCEPT AS SPECIFICALLY NOTED).

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Takara Bio USA, Inc. provides kits, reagents, instruments, and services that help researchers explore questions about gene discovery, regulation, and function. As a member of the Takara Bio Group, Takara Bio USA is part of a company that holds a leadership position in the global market and is committed to improving the human condition through biotechnology. Our mission is to develop high-quality innovative tools and services to accelerate discovery.

FOR RESEARCH USE ONLY. NOT FOR USE IN DIAGNOSTIC PROCEDURES (EXCEPT AS SPECIFICALLY NOTED).

Clontech, TaKaRa, cellartis

  • Products
  • COVID-19 research
  • Next-generation sequencing
  • Real-time PCR
  • Stem cell research
  • mRNA and cDNA synthesis
  • PCR
  • Cloning
  • Nucleic acid purification
  • Gene function
  • Protein research
  • Antibodies and ELISA
  • New products
  • Special offers
  • COVID-19 research
  • Viral detection with qPCR
  • SARS-CoV-2 pseudovirus
  • Human ACE2 stable cell line
  • Viral RNA isolation
  • Viral and host sequencing
  • Vaccine development
  • CRISPR screening
  • Drug discovery
  • Immune profiling
  • Publications
  • Next-generation sequencing
  • Spatial omics
  • RNA-seq
  • DNA-seq
  • Single-cell NGS automation
  • Reproductive health
  • Bioinformatics tools
  • Immune profiling
  • Real-time PCR
  • Great value master mixes
  • Signature enzymes
  • High-throughput real-time PCR solutions
  • Detection assays
  • References, standards, and buffers
  • Stem cell research
  • Media, differentiation kits, and matrices
  • Stem cells and stem cell-derived cells
  • mRNA and cDNA synthesis
  • In vitro transcription
  • cDNA synthesis kits
  • Reverse transcriptases
  • RACE kits
  • Purified cDNA & genomic DNA
  • Purified total RNA and mRNA
  • PCR
  • Most popular polymerases
  • High-yield PCR
  • High-fidelity PCR
  • GC rich PCR
  • PCR master mixes
  • Cloning
  • In-Fusion seamless cloning
  • Competent cells
  • Ligation kits
  • Restriction enzymes
  • Nucleic acid purification
  • Automated platforms
  • Plasmid purification kits
  • Genomic DNA purification kits
  • DNA cleanup kits
  • RNA purification kits
  • Gene function
  • Gene editing
  • Viral transduction
  • Fluorescent proteins
  • T-cell transduction and culture
  • Tet-inducible expression systems
  • Transfection reagents
  • Cell biology assays
  • Protein research
  • Purification products
  • Two-hybrid and one-hybrid systems
  • Mass spectrometry reagents
  • Antibodies and ELISA
  • Primary antibodies and ELISAs by research area
  • Fluorescent protein antibodies
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  • Download qPCR resources
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  • Guest webinar: extraction-free SARS-CoV-2 detection
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  • mRNA and protein therapeutics
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  • Pathogen detection
  • Sample prep
  • Detection methods
  • Identification and characterization
  • SARS-CoV-2
  • Antibiotic-resistant bacteria
  • Food crop pathogens
  • Waterborne disease outbreaks
  • Viral-induced cancer
  • Immunotherapy research
  • T-cell therapy
  • Antibody therapeutics
  • T-cell receptor profiling
  • TBI initiatives in cancer therapy
  • Cancer research
  • Kickstart your cancer research with long-read sequencing
  • Sample prep from FFPE tissue
  • Sample prep from plasma
  • Cancer biomarker quantification
  • Single cancer cell analysis
  • Cancer transcriptome analysis
  • Cancer genomics and epigenomics
  • HLA typing in cancer
  • Gene editing for cancer therapy/drug discovery
  • Alzheimer's disease research
  • Antibody engineering
  • Sample prep from FFPE tissue
  • Single-cell sequencing
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