Download the software (version 1.6)
OS X/Linux: El Capitan (version 10.11 and up), CentOS 6 or higher, RedHat 7.5 or higher
For use in conjunction with:
- SMART-Seq Human BCR (with UMIs)
- SMART-Seq Human TCR (with UMIs)
- SMARTer Human BCR IgG IgM H/K/L Profiling Kit
- SMARTer Human TCR a/b Profiling Kit v2
- SMART-Seq Mouse TCR (with UMIs)
More information is available in the Cogent NGS Immune Profiler v1.6 User Manual and the Cogent NGS Immune Profiler v1.6 and Cogent NGS Immune Viewer v1.0 Quick Start Guide.
Hardware and software prerequisites
Hardware requirements
- 16 GB RAM
- At least 100 GB of available hard drive space (dependent on input FASTQ file size)
Third-party software dependencies*
- Java 1.8–1.15 (Java SE 8–15)
- Python 3.6 or higher
*Not included with the software, must be downloaded and installed separately. Please see the Cogent NGS Immune Profiler Software v1.6 User Manual for more information on where to obtain and installation guidelines for the third party software.
Also visit:
Cogent NGS Immune Viewer
Quickly visualize and prepare publication-ready figures of your immune profiling data using output files from the Cogent NGS Immune Profiler.
Featured products
SMART-Seq Human TCR (with UMIs)
SMART-Seq Human TCR (with UMIs) has optimized chemistry, UMIs, and UDIs for more accurate, reliable clonotype calling and quantification.
SMART-Seq Human BCR (with UMIs)
SMART-Seq Human BCR (with UMIs) boasts optimized chemistry, UMIs, and UDIs for more accurate, reliable clonotype calling and quantification.
SMART-Seq Mouse TCR (with UMIs)
SMART-Seq Mouse TCR (with UMIs) enables detection of mouse TCR sequences with sensitivity and no bias.
Takara Bio USA, Inc.
United States/Canada: +1.800.662.2566 • Asia Pacific: +1.650.919.7300 • Europe: +33.(0)1.3904.6880 • Japan: +81.(0)77.565.6999
FOR RESEARCH USE ONLY. NOT FOR USE IN DIAGNOSTIC PROCEDURES. © 2023 Takara Bio Inc. All Rights Reserved. All trademarks are the property of Takara Bio Inc. or its affiliate(s) in the U.S. and/or other countries or their respective owners. Certain trademarks may not be registered in all jurisdictions. Additional product, intellectual property, and restricted use information is available at takarabio.com.
