Download the software (version 1.6)
OS X/Linux: El Capitan (version 10.11 and up), CentOS 6 or higher, RedHat 7.5 or higher
For use in conjunction with:
- SMART-Seq Human BCR (with UMIs)
- SMART-Seq Human TCR (with UMIs)
- SMARTer Human BCR IgG IgM H/K/L Profiling Kit
- SMARTer Human TCR a/b Profiling Kit v2
- SMART-Seq Mouse TCR (with UMIs)
More information is available in the Cogent NGS Immune Profiler v1.6 User Manual and the Cogent NGS Immune Profiler v1.6 and Cogent NGS Immune Viewer v1.0 Quick Start Guide.
Hardware and software prerequisites
- 16 GB RAM
- At least 100 GB of available hard drive space (dependent on input FASTQ file size)
Third-party software dependencies*
- Java 1.8–1.15 (Java SE 8–15)
- Python 3.6 or higher
*Not included with the software, must be downloaded and installed separately. Please see the Cogent NGS Immune Profiler Software v1.6 User Manual for more information on where to obtain and installation guidelines for the third party software.
Quickly visualize and prepare publication-ready figures of your immune profiling data using output files from the Cogent NGS Immune Profiler.
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