Cogent NGS software example data download confirmation

Thank you for your interest in downloading example data for use with Cogent NGS Analysis Pipeline (CogentAP) and Cogent NGS Discovery Software (CogentDS). Below are instructions to access your dataset of choice through direct links or via command line.

Access datasets with direct links

Download the PDF below for direct links to the example datasets.

Access example datasets with direct links

Access datasets via command line

Part A [for all datasets]
Download and unpack the executable by following the two steps below.

1. Download the latest files-cli for linux (files-cli_linux_64bit.tar.gz) from Releases · Files-com/files-cli
2. Unpack the tarball using: tar zxvf files-cli_linux_64bit.tar.gz. This will create the files-cli executable.

Part B [dataset-specific]
Once the executable is ready, download using commands specific to each dataset. Please adjust the “custom_path/to/download" section referenced in each command to fit the location where you would like to direct your downloaded dataset. 

Shasta total RNA-seq data (raw)
100,000 PBMCs | single-cell total RNA-seq | raw FASTQ files | 1.2TB
Download with the following command:
./files-cli --api-key="6961dfbb54d0dd30feb8388e9ed7357ca278e98a89b037384c4960dfc67a7b45" download "/Bioinformatic_Support/ShastaTotalRNA-SKY52" custom_path/to/download

Shasta total RNA-seq data (demultiplexed)
100,000 PBMCs | single-cell total RNA-seq | demultiplexed data files | 2 TB
Download with the following command:
./files-cli --api-key="8a21af56edc28d82f13e5ef01016298cebc8b345375081b9535d7574badeb137" download "/Bioinformatic_Support/Shasta-pre-sales-data-sharing/Shasta_Total_RNA_100K_PBMC_NovaSeq" custom_path/to/download

Shasta total RNA-seq data (subset)
10,000 PBMC subset at original depths | single-cell total RNA-seq | demultiplexed FASTQ files | 126 GB
Download with the following command:
./files-cli --api-key="12ad84e0c384d4c718923cf753e1886dcac2be9442bf9c223b8752d702e44939" download "/Bioinformatic_Support/Shasta-pre-sales-data-sharing/Shasta_Total_RNA_10k_PBMC_NovaSeq" custom_path/to/download

Shasta whole-genome amplification (WGA) data
1,500 immortalized cancer cells | single-cell DNA-seq | demultiplexed FASTQ files | 418 GB
Download with the following command:
./files-cli --api-key="a3591033d309ab8666769905f2d4b446bdd8260688c11e0517adf9dcf8bf0c01" download "/Bioinformatic_Support/Shasta-pre-sales-data-sharing/Shasta_WGA_1500_cancer_cell_line_NovaSeq" custom_path/to/download

SMART-Seq Pro (Shasta mRNA-seq) data
714 PBMCs | single-cell mRNA-seq | demultiplexed FASTQ files | 27 GB
Please use the direct link in the PDF above.

Refer to product documentation for assistance with Cogent software installation and usage of features. More information is available at Bioinformatics resources.

Please contact Technical Support for additional support with installation or usage, or to provide feedback about the product.