Cogent NGS Analysis Pipeline
Cogent NGS Analysis Pipeline (CogentAP) is bioinformatics software for analyzing RNA-seq data. Please refer to the table at the bioinformatics resource portal for the full list of validated Takara Bio reagent kits supported for use with the pipeline.
The program takes input files from sequencers and outputs an HTML report, with results typical to single-cell analysis, and other files, such as a gene matrix, to continue further analysis. An R data object with results computed based on recommended parameters is also created. Either the standard output files or the R data object can serve as input for Cogent NGS Discovery Software.
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