Cogent NGS Analysis Pipeline
Cogent NGS Analysis Pipeline (CogentAP) is bioinformatics software for analyzing RNA-seq NGS data generated using the following systems or kits.
- ICELL8 cx Single-Cell System or the ICELL8 Single-Cell system on the single-cell full-length transcriptome or single-cell differential expression (3' DE or 5' DE) workflows, including 3′ DE for UMI.
- SMARTer Stranded Total RNA-Seq Kit v3 - Pico Input Mammalian (Pico v3)
The program takes input files from sequencers and outputs an HTML report, with results typical to single-cell analysis, and other files, such as a gene matrix, to continue further analysis. An R data object with results computed based on recommended parameters is also created. Either the standard output files or the R data object can serve as input for Cogent NGS Discovery Software.
Get started
Product page
Cogent NGS Analysis Pipeline takes input data from sequencing and a well-list file and outputs an HTML report and other files, such as a gene matrix, to continue further analysis.
User Manual
Learn more about the requirements, installation, usage, and output of the Cogent NGS Analysis Pipeline.
Additional resources
Software notices
Learn more about software notices and data output FAQs for the Cogent NGS Analysis Profiler.
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