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High-throughput real-time PCR

The SmartChip Real-Time PCR System is a high-throughput, automated platform for performing RT-qPCR and qPCR. The system's unique ability to dispense a wide array of sample and assay combinations in a blank nanowell-based chip gives you the freedom to design, verify, validate, update, and perform tests on the same platform without worrying about custom consumables, rigid dispense options, or having to revalidate when changing platforms.

Maximize throughput with an automated workflow »

Shorten and simplify assay verification and validation »

Significantly reduce reagent costs without compromising data »


Maximize throughput with an automated workflow

Perform a run with up to 768 samples in under four hours

The SmartChip Real-Time PCR System is composed of the SmartChip MultiSample NanoDispenser (MSND) and the SmartChip Real-Time PCR Cycler. The SmartChip system workflow utilizes the MSND for high-precision, nanoliter-volume liquid handling capable of dispensing into a 5,184-nanowell MyDesign chip. The SmartChip cycler performs real-time PCR analysis in two hours and supports probe- or dye-based assays such as FAM, VIC, ROX, and green intercalating dyes.

Each chip maximizes the number of samples using flexible dispense patterns. Small, single-digit assay panels accommodate up to 768 samples. Mid-size, 24–48 target panels work with 100s of samples. Large, 100+ panels can be run on dozens of samples at a time—all in around 4 hours with 30 minutes of hands-on time. The system includes an integrated analysis software that enables the interrogation of over 10,000 samples per day. Data can also be easily exported into other analysis tools. 

Figure 1. Add your samples and assays to the SmartChip MyDesign Kit and then analyze using the SmartChip Real-Time PCR System.


Shorten and simplify assay verification and validation

Dispense what you want, when you want

Decrease the reliance on expensive, custom formats that often have long lead times and large minimum order sizes. The power of the SmartChip system is derived from the 5,184 individual nanowells on each chip provided in the SmartChip MyDesign Kit. The chips can be dispensed in 15 different assay and sample arrangements, allowing you to run the experiments you want instead of tailoring your experiments to fit rigid sample and assay formats (Table I). Moreover, because you do the dispensing, you don’t have to wait for a custom format to be produced and shipped to you. You can easily modify panels without wasting time and money. The same chips can be used for both assay design and execution, shortening time to regulatory submission and approval.

Supported chip configurations
Assays 12 24 36 48 54 72 80 96 120 144 216 248 296 384 768
Samples 384 216 144 108 96 72 64 54 42 36 24 20 16 12 6

Table I. Range of assay and sample configurations possible with the SmartChip MyDesign Kit.


Significantly reduce reagent costs without compromising data

Save costs without compromising limits of detection

The reactions performed in the SmartChip system are 100–200 nl, which is the “Goldilocks” volume for qPCR. This range is not too large, especially compared to plates, which leads to less reagent volume consumed per run and provides better value per sample. However, this range is also not too small, when compared with other high-throughput slides and IFCs, which maintains sensitivity without a requirement for preamplification (Figure 2).

In testing limits of detection for SARS-CoV-2 viral copy number, we demonstrated reliable detection at 8 copies/μl, which translates to ~1 copy per nanowell reaction. These data demonstrate not only the sensitivity but the added value of being able to run more tests per sample to potentially increase confidence with minimal time and expense.

Comparison of reagent cost savings

Figure 2. Comparison of reagent savings when scaling down qPCR reaction volumes. 100-nl reactions can give up to 200X reduction in reagent usage. 


Frequently asked questions

Can you help with nucleic acid purification or sample collection?

We have a large selection of nucleic acid purification products that we would be glad to discuss with you and help to implement into your workflows. We do not currently provide tools for sample collection.

Do you provide assays, primer sets, or panels for SmartChip applications?

Aside from our complete clinical testing kits, we currently do not offer any content for these applications. In many cases, our partners already have their own panels defined or supplied. However, we have multiple relationships with providers of primers and panels and can help you find the resources and supplier you need to build a panel for your area of interest. 


Flexible, high-throughput qPCR for gene expression and genotyping analysis

In this webinar, Dr. Chris Sontag (Takara Bio USA, Inc.) introduces the SmartChip Real-Time PCR System. This complete system enables high-throughput real-time PCR for gene expression or single nucleotide polymorphism (SNP) genotyping analysis. Learn about the system and hear about some of the exciting research that has been enabled by the SmartChip system, including studies on antibiotic resistance genes, miRNAs implicated in cancer, and genotyping of human blood and animal samples.

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Takara Bio USA, Inc. provides kits, reagents, instruments, and services that help researchers explore questions about gene discovery, regulation, and function. As a member of the Takara Bio Group, Takara Bio USA is part of a company that holds a leadership position in the global market and is committed to improving the human condition through biotechnology. Our mission is to develop high-quality innovative tools and services to accelerate discovery.

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Flexible, high-throughput qPCR for gene expression and genotyping analysis

In this webinar, Dr. Chris Sontag (Takara Bio USA, Inc.) introduces the SmartChip Real-Time PCR System. This complete system enables high-throughput real-time PCR for gene expression or single nucleotide polymorphism (SNP) genotyping analysis. Learn about the system and hear about some of the exciting research that has been enabled by the SmartChip system, including studies on antibiotic resistance genes, miRNAs implicated in cancer, and genotyping of human blood and animal samples.

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Takara Bio USA, Inc. provides kits, reagents, instruments, and services that help researchers explore questions about gene discovery, regulation, and function. As a member of the Takara Bio Group, Takara Bio USA is part of a company that holds a leadership position in the global market and is committed to improving the human condition through biotechnology. Our mission is to develop high-quality innovative tools and services to accelerate discovery.

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  • Human ACE2 stable cell line
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  • Immune profiling
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  • Spatial omics
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  • DNA-seq
  • Single-cell NGS automation
  • Reproductive health
  • Bioinformatics tools
  • Immune profiling
  • Real-time PCR
  • Great value master mixes
  • Signature enzymes
  • High-throughput real-time PCR solutions
  • Detection assays
  • References, standards, and buffers
  • Stem cell research
  • Media, differentiation kits, and matrices
  • Stem cells and stem cell-derived cells
  • mRNA and cDNA synthesis
  • In vitro transcription
  • cDNA synthesis kits
  • Reverse transcriptases
  • RACE kits
  • Purified cDNA & genomic DNA
  • Purified total RNA and mRNA
  • PCR
  • Most popular polymerases
  • High-yield PCR
  • High-fidelity PCR
  • GC rich PCR
  • PCR master mixes
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  • In-Fusion seamless cloning
  • Competent cells
  • Ligation kits
  • Restriction enzymes
  • Nucleic acid purification
  • Automated platforms
  • Plasmid purification kits
  • Genomic DNA purification kits
  • DNA cleanup kits
  • RNA purification kits
  • Gene function
  • Gene editing
  • Viral transduction
  • Fluorescent proteins
  • T-cell transduction and culture
  • Tet-inducible expression systems
  • Transfection reagents
  • Cell biology assays
  • Protein research
  • Purification products
  • Two-hybrid and one-hybrid systems
  • Mass spectrometry reagents
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  • Download qPCR resources
  • Overview
  • Reaction size guidelines
  • Guest webinar: extraction-free SARS-CoV-2 detection
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