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  • ‹ Back to NGS library prep
  • General purpose library prep (50 pg–50 ng)
  • Library prep from cfDNA or FFPE DNA (250 pg–200 ng)
  • Library prep with enzymatic fragmentation (100 pg–200 ng)
  • Library prep from ssDNA
Benchmarking vs. Kapa & NEBNext
ThruPLEX FLEX EF tech note ThruPLEX FLEX EF tech note
Home › Products › Next-generation sequencing › DNA-seq › NGS library prep › Library prep with enzymatic fragmentation (100 pg–200 ng)

DNA-seq

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  • NGS library prep
    • General purpose library prep (50 pg–50 ng)
    • Library prep from cfDNA or FFPE DNA (250 pg–200 ng)
    • Library prep with enzymatic fragmentation (100 pg–200 ng)
    • Library prep from ssDNA
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    • Legacy ThruPLEX DNA-seq kits
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    • ChIP-seq library construction
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Benchmarking vs. Kapa & NEBNext
ThruPLEX FLEX EF tech note ThruPLEX FLEX EF tech note

NGS library prep with enzymatic fragmentation for processing of intact DNA—ThruPLEX DNA-Seq FLEX EF

Note: The protocols and QC procedures for the ThruPLEX HV PLUS kits have been updated to accommodate lower inputs and compatibility with our Unique Dual Index (UDI) Kit sets. While the product naming has been updated to ThruPLEX DNA-Seq FLEX EF, reagent formulations remain unchanged. ThruPLEX HV PLUS product bundles (including the ThruPLEX HV UDI and enzymatic fragmentation module) are in the process of being phased out but may still be purchased for a limited time. Please refer to the legacy ThruPLEX kits page for availability.

ThruPLEX DNA-Seq FLEX EF is a robust, user-friendly NGS library preparation system designed for processing intact DNA inputs with a size-tunable enzymatic fragmentation-based approach. This technology yields DNA libraries with high molecular complexity and balanced GC representation that maximizes library and data quality for both genome-wide and targeted sequencing applications.

Note: The protocols and QC procedures for the ThruPLEX HV PLUS kits have been updated to accommodate lower inputs and compatibility with our Unique Dual Index (UDI) Kit sets. While the product naming has been updated to ThruPLEX DNA-Seq FLEX EF, reagent formulations remain unchanged. ThruPLEX HV PLUS product bundles (including the ThruPLEX HV UDI and enzymatic fragmentation module) are in the process of being phased out but may still be purchased for a limited time. Please refer to the legacy ThruPLEX kits page for availability.

ThruPLEX DNA-Seq FLEX EF is a robust, user-friendly NGS library preparation system designed for processing intact DNA inputs with a size-tunable enzymatic fragmentation-based approach. This technology yields DNA libraries with high molecular complexity and balanced GC representation that maximizes library and data quality for both genome-wide and targeted sequencing applications.

ThruPLEX DNA-Seq FLEX EF has been optimized to accommodate higher inputs (≤200 ng) and input volumes (≤30 µl) than the original ThruPLEX DNA-Seq Kit. With the patented ThruPLEX approach, leftover adapters are degraded post-ligation, avoiding the need for adapter dilution and intermediate cleanup steps required by other NGS library preparation methods. This approach allows for a very simple workflow, which can be completed using a single tube or well in around two hours with 15 min of hands-on time.

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Cat. # Product Size Price License Quantity Details
635100 ThruPLEX® DNA-Seq FLEX EF 24 Rxns USD $790.00

License Statement

ID Number  
326 This product is protected by U.S. Patents 7,803,550; 8,399,199; 8,728,737, 9,598,727, 10,196,686, 10,208,337, 11,072,823 and corresponding foreign patents. Additional patents are pending. For further license information, please contact a Takara Bio USA licensing representative by email at licensing@takarabio.com.

ThruPLEX DNA-Seq FLEX EF employs enzymatic fragmentation with a simple, three-step workflow to generate high-complexity DNA libraries from intact, double-stranded DNA. Unique dual index (UDI) kits are available for purchase separately. This product contains reagents for 24 reactions.

Notice to purchaser

Our products are to be used for Research Use Only. They may not be used for any other purpose, including, but not limited to, use in humans, therapeutic or diagnostic use, or commercial use of any kind. Our products may not be transferred to third parties, resold, modified for resale, or used to manufacture commercial products or to provide a service to third parties without our prior written approval.

Documents Components
635101 ThruPLEX® DNA-Seq FLEX EF 96 Rxns USD $2659.00

License Statement

ID Number  
326 This product is protected by U.S. Patents 7,803,550; 8,399,199; 8,728,737, 9,598,727, 10,196,686, 10,208,337, 11,072,823 and corresponding foreign patents. Additional patents are pending. For further license information, please contact a Takara Bio USA licensing representative by email at licensing@takarabio.com.

ThruPLEX DNA-Seq FLEX EF employs enzymatic fragmentation with a simple, three-step workflow to generate high-complexity DNA libraries from intact, double-stranded DNA. Unique dual index (UDI) kits are available for purchase separately. This product contains reagents for 96 reactions.

Notice to purchaser

Our products are to be used for Research Use Only. They may not be used for any other purpose, including, but not limited to, use in humans, therapeutic or diagnostic use, or commercial use of any kind. Our products may not be transferred to third parties, resold, modified for resale, or used to manufacture commercial products or to provide a service to third parties without our prior written approval.

Documents Components

Indexing kits (plate format)

Overview

  • Construct Illumina-ready libraries from 100 pg–200 ng inputs of intact dsDNA
  • Skip mechanical fragmentation with a size-tunable enzymatic fragmentation module
  • Save time and minimize the likelihood of sample loss with a single-tube workflow
  • Maximize data quality with superior coverage uniformity and representation of GC-rich regions
  • Multiplex up to 384 samples with Unique Dual Index Kit compatibility
  • Purchase the core chemistry separately for processing of fragmented DNA

More Information

Please see the product's Certificate of Analysis for information about storage conditions, product components, and technical specifications. Please see the Kit Components List to determine kit components. Certificates of Analysis and Kit Components Lists are located under the Documents tab.

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FOR RESEARCH USE ONLY. NOT FOR USE IN DIAGNOSTIC PROCEDURES. © 2025 Takara Bio Inc. All Rights Reserved. All trademarks are the property of Takara Bio Inc. or its affiliate(s) in the U.S. and/or other countries or their respective owners. Certain trademarks may not be registered in all jurisdictions. Additional product, intellectual property, and restricted use information is available at takarabio.com.

Takara Bio

Takara Bio USA, Inc. provides kits, reagents, instruments, and services that help researchers explore questions about gene discovery, regulation, and function. As a member of the Takara Bio Group, Takara Bio USA is part of a company that holds a leadership position in the global market and is committed to improving the human condition through biotechnology. Our mission is to develop high-quality innovative tools and services to accelerate discovery.

FOR RESEARCH USE ONLY. NOT FOR USE IN DIAGNOSTIC PROCEDURES (EXCEPT AS SPECIFICALLY NOTED).

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Takara Bio USA, Inc. provides kits, reagents, instruments, and services that help researchers explore questions about gene discovery, regulation, and function. As a member of the Takara Bio Group, Takara Bio USA is part of a company that holds a leadership position in the global market and is committed to improving the human condition through biotechnology. Our mission is to develop high-quality innovative tools and services to accelerate discovery.

FOR RESEARCH USE ONLY. NOT FOR USE IN DIAGNOSTIC PROCEDURES (EXCEPT AS SPECIFICALLY NOTED).

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  • COVID-19 research
  • Viral detection with qPCR
  • SARS-CoV-2 pseudovirus
  • Human ACE2 stable cell line
  • Viral RNA isolation
  • Viral and host sequencing
  • Vaccine development
  • CRISPR screening
  • Drug discovery
  • Immune profiling
  • Publications
  • Next-generation sequencing
  • Spatial omics
  • RNA-seq
  • DNA-seq
  • Single-cell NGS automation
  • Reproductive health
  • Bioinformatics tools
  • Immune profiling
  • Real-time PCR
  • Great value master mixes
  • Signature enzymes
  • High-throughput real-time PCR solutions
  • Detection assays
  • References, standards, and buffers
  • Stem cell research
  • Media, differentiation kits, and matrices
  • Stem cells and stem cell-derived cells
  • mRNA and cDNA synthesis
  • In vitro transcription
  • cDNA synthesis kits
  • Reverse transcriptases
  • RACE kits
  • Purified cDNA & genomic DNA
  • Purified total RNA and mRNA
  • PCR
  • Most popular polymerases
  • High-yield PCR
  • High-fidelity PCR
  • GC rich PCR
  • PCR master mixes
  • Cloning
  • In-Fusion seamless cloning
  • Competent cells
  • Ligation kits
  • Restriction enzymes
  • Nucleic acid purification
  • Automated platforms
  • Plasmid purification kits
  • Genomic DNA purification kits
  • DNA cleanup kits
  • RNA purification kits
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  • Gene editing
  • Viral transduction
  • Fluorescent proteins
  • T-cell transduction and culture
  • Tet-inducible expression systems
  • Transfection reagents
  • Cell biology assays
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  • Waterborne disease outbreaks
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  • TBI initiatives in cancer therapy
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  • Kickstart your cancer research with long-read sequencing
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  • HLA typing in cancer
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