- All-in-one cDNA synthesis and library prep from single cells
- Automation-friendly, all-in-one cDNA synthesis and library prep
- All-in-one cDNA synthesis and library prep from ultra-low RNA inputs
- 3' mRNA libraries from single cells (SMART-Seq v4 3' DE Kit)
- Full-length mRNA-seq for target capture
- Stranded libraries from single cells
- Stranded libraries from picogram-input total RNA (v3)
- Stranded libraries from 100 pg-100 ng total RNA
- Stranded libraries from 100 ng - 1 ug total RNA
- Stranded libraries from FFPE inputs (v2)
- Nonstranded libraries from FFPE inputs
- Cogent NGS Analysis Pipeline
- Cogent NGS Discovery Software
- SMART-Seq DE3 Demultiplexer
Cogent NGS Analysis Pipeline notices
The issues described below for the Cogent NGS Analysis Pipeline are ones that have been seen or reported. If you encounter other errors using CogentAP or are unable to resolve the problem using the suggestions below, please:
- Capture a screenshot of the text of the error you see on the screen.
- Gather the relevant log file(s). Refer to the FAQ entry below for more detailed information about the logs.
- Send the screenshot and gathered log file(s) to Technical Support, along with a brief description of the issue.
Software issues FAQs
List & description of log files
|Problem area||Log filename||Directory location|
|Demuxer||demux_demuxer.log||[Configured demux output folder] (see Figures 1 and 2)|
|Analyzer||analysis_analyzer.log||[Configured analysis output folder] (see Figures 1 and 3)|
Analyze RNA-seq data generated from ICELL8 system applications.
Visualize RNA-seq data in UMAP or t-SNE charts from the output of the Cogent NGS Analysis Pipeline.
Demultiplex sequencing data from the SMART-Seq v4 3′ DE Kit into sorted read data files.
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