hanta R kit

Version 1.0

Overview

The ICELL8 system allows for a high-throughput, nanowells-based method to isolate nuclei or single cells of any size—and the flexibility to analyze multiple parameters in single experiments. It also uses the power of imaging to distinguish true single cells from multiple cells and live cells from dead cells—allowing you to draw meaningful conclusions from the data.

But as automation instruments become more time and cost efficient in the research field, they produce thousands of data points to analyze per run. Software that can take that information and transform it into a format for the scientist to more readily use is vital.

The hanta™ R kit is bioinformatic software for user-friendly analysis, either via standard analysis or a tSNE application tool, of sequencing data derived from Takara Bio platforms. The mappa Analysis Pipeline can be used to prepare files ready for import into hanta software.

Supported operating systems

Windows 7
MacOSX (Sierra v10.12.6)
Centos (version 6.9+)

Hardware requirements

8 GB RAM

Additional third-party software dependencies*

R
Rtools (for Windows users and some MacOSX users)
RStudio or Pandoc
R devtools

*Not included with the software; must be downloaded and installed separately.

Additional product information

For use in conjunction with workflows on the ICELL8 cx Single-Cell or ICELL8 Single-Cell System System. More information is available in the hanta R kit User Guide.

Sign up to get a Cogent NGS Discovery Software authorization code

If you are interested in using CogentDS, please review the End User License Agreement (EULA) before populating the required fields of the form.

After checking the box to indicate acceptance of the EULA and submitting the completed form, you will be emailed with a code to activate the software. Installation instructions can be found in the Cogent NGS Discovery Software v1.0 User Manual or Quick Start Guide .

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