Cogent NGS Discovery Software
Cogent NGS Discovery Software v1.0 (CogentDS) is bioinformatic software for user-friendly analysis of sequencing data generated with Takara Bio platforms. The Cogent NGS Analysis Pipeline v1.0 (CogentAP) can be used to prepare files ready for import into CogentDS.
Key update: Improved clustering and visualization
Beginning with CogentDS, top Principal Components can be reduced and visualized using the Uniform Manifold Approximation and Projection (UMAP, recommended) method as well as the t-Distributed Stochastic Neighbor Embedding (t-SNE) method.
Upon acceptance of the EULA and submitting the form, you will be sent an email with a key required to install CogentDS. Follow the installation instructions in the Cogent NGS Discovery Software v1.0 User Manual or Quick Start Guide. CogentDS includes the following files:
- GUI launcher
- Example mini-dataset files—can be used to test the Discovery functionality (CogentDS data object [*.rda], gene_info.csv, gm.csv, and metadata.csv)
- Sample output—compare to the analysis results of the mini-dataset
Supported operating systems
- Windows 7, Windows 10
- macOS Sierra (v10.12) or higher
- Linux CentOS 6.9+ or higher
- 8 GB RAM
- >2 GB of free disk space
Additional third-party software dependencies*
- RStudio Desktop
- R devtools
- Pandoc (optional; only required for advanced users that wish to forgo RStudio and run R from the command line)
*Not included with the software; must be downloaded and installed separately.
Additional product information
For use in conjunction with workflows on the ICELL8 cx Single-Cell or ICELL8 Single-Cell System. More information is available in the Cogent NGS Discovery Software v1.0 User Manual or Quick Start Guide.
Cogent NGS Discovery Software version history
|Version number||Release date||Notes|
|hanta software 1.0||2019-06-07||
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