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Home › Learning centers › Spatial omics › Spatial bioinformatics resources › Datasets request

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Example datasets for Takara Bio spatial kits

Download datasets generated with the Trekker Single-Cell Spatial Mapping Kit and Seeker Spatial Transcriptomics Kit to explore how these cutting-edge technologies enable you to uncover unprecedented insights into cellular interactions and their roles in diverse biological processes. Experience the intuitive design and robust capabilities of our bioinformatics solutions—the Trekker and Seeker Analysis Pipelines.

Designed for researchers of all experience levels, these analysis tools are easy to use, requiring limited bioinformatics expertise and are available on the cloud or can be installed locally.

Explore example datasets, generated with the Trekker and Seeker kits across a variety of human and mouse tissues. Although the datasets tabulated below are from human and mouse tissue, the kits are species agnostic and use the same workflow for all samples.

Kit Sample type  Single-cell assay Data link
Trekker U Single-Cell Spatial Mapping Kit Input mouse kidney (*FASTQ) BD Rhapsody System Single-Cell ATAC-Seq and mRNA Whole Transcriptome Analysis Sign up below for access
Mouse brain Chromium GEM-X Single Cell 3' Kit v4
Mouse brain Chromium Next GEM Single Cell 3ʹ Kit v3.1
Mouse brain BD Rhapsody System Single-Cell mRNA Whole Transcriptome Analysis
Mouse brain Illumina Single Cell 3′ RNA Prep 
Mouse embryo (H&E file available) BD Rhapsody System Single-Cell mRNA Whole Transcriptome Analysis
Mouse kidney Chromium Next GEM Single Cell Multiome ATAC + Gene Expression
Mouse kidney BD Rhapsody System Single-Cell ATAC-Seq and mRNA Whole Transcriptome Analysis
Mouse testis Illumina Single Cell 3′ RNA Prep
Trekker Q Single-Cell Spatial Mapping Kit Mouse kidney Parse Evercode WT v3
Human breast cancer Parse Evercode WT v3
Seeker 10x10 Spatial Transcriptomics Kit Human melanoma n/a
Mouse brain
Mouse embryo
Seeker 3x3 Spatial Transcriptomics Kit Human breast cancer
Mouse hippocampus
Mouse liver
Mouse spleen

Most data sets are outputs, not raw sequencing data. The files that include raw sequencing data are identified as (FASTQ).

To access these datasets generated with the Trekker and Seeker spatial kits, follow these steps:

  1. Sign up using the form below.
  2. You will receive an email containing a link to a confirmation page and an Access Code. Please save the email for future reference.
  3. Open the link in the email and enter the code to get access to the datasets page for a period of 24 hours. Bookmarking the datasets page will not extend access.
  4. If more than 24 hours have elapsed since you entered the access code and you wish to access the datasets again, go back to the original email and repeat step 3.
  5. If you have deleted the email, please submit the form again (Step 1).

Questions? Contact technical_support@takarabio.com


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Takara Bio USA, Inc. provides kits, reagents, instruments, and services that help researchers explore questions about gene discovery, regulation, and function. As a member of the Takara Bio Group, Takara Bio USA is part of a company that holds a leadership position in the global market and is committed to improving the human condition through biotechnology. Our mission is to develop high-quality innovative tools and services to accelerate discovery.

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  • DNA-seq
  • Single-cell NGS automation
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  • COVID-19 research
  • Viral detection with qPCR
  • SARS-CoV-2 pseudovirus
  • Human ACE2 stable cell line
  • Viral RNA isolation
  • Viral and host sequencing
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  • CRISPR screening
  • Drug discovery
  • Immune profiling
  • Publications
  • Real-time PCR
  • Great value master mixes
  • Signature enzymes
  • High-throughput real-time PCR solutions
  • Detection assays
  • References, standards, and buffers
  • Stem cell research
  • Media, differentiation kits, and matrices
  • Stem cells and stem cell-derived cells
  • mRNA and cDNA synthesis
  • In vitro transcription
  • cDNA synthesis kits
  • Reverse transcriptases
  • RACE kits
  • Purified cDNA & genomic DNA
  • Purified total RNA and mRNA
  • PCR
  • Most popular polymerases
  • High-yield PCR
  • High-fidelity PCR
  • GC rich PCR
  • PCR master mixes
  • Cloning
  • In-Fusion seamless cloning
  • Competent cells
  • Ligation kits
  • Nucleic acid purification
  • Automated platforms
  • Plasmid purification kits
  • Genomic DNA purification kits
  • DNA cleanup kits
  • RNA purification kits
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  • Gene editing
  • Viral transduction
  • Fluorescent proteins
  • T-cell transduction and culture
  • Tet-inducible expression systems
  • Transfection reagents
  • Cell biology assays
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