Example datasets for Takara Bio spatial kits
Download datasets generated with the Trekker Single-Cell Spatial Mapping Kit and Seeker Spatial Transcriptomics Kit to explore how these cutting-edge technologies enable you to uncover unprecedented insights into cellular interactions and their roles in diverse biological processes. Experience the intuitive design and robust capabilities of our bioinformatics solutions—the Trekker and Seeker Analysis Pipelines.
Designed for researchers of all experience levels, these analysis tools are easy to use, requiring limited bioinformatics expertise and are available on the cloud or can be installed locally.
Explore example datasets, generated with the Trekker and Seeker kits across a variety of human and mouse tissues. Although the datasets tabulated below are from human and mouse tissue, the kits are species agnostic and use the same workflow for all samples.
| Kit | Sample type | Single-cell assay | Data link |
| Trekker U Single-Cell Spatial Mapping Kit | Input mouse kidney (*FASTQ) | BD Rhapsody System Single-Cell ATAC-Seq and mRNA Whole Transcriptome Analysis | Sign up below for access |
| Mouse brain | Chromium GEM-X Single Cell 3' Kit v4 | ||
| Mouse brain | Chromium Next GEM Single Cell 3ʹ Kit v3.1 | ||
| Mouse brain | BD Rhapsody System Single-Cell mRNA Whole Transcriptome Analysis | ||
| Mouse brain | Illumina Single Cell 3′ RNA Prep | ||
| Mouse embryo (H&E file available) | BD Rhapsody System Single-Cell mRNA Whole Transcriptome Analysis | ||
| Mouse kidney | Chromium Next GEM Single Cell Multiome ATAC + Gene Expression | ||
| Mouse kidney | BD Rhapsody System Single-Cell ATAC-Seq and mRNA Whole Transcriptome Analysis | ||
| Mouse testis | Illumina Single Cell 3′ RNA Prep | ||
| Trekker Q Single-Cell Spatial Mapping Kit | Mouse kidney | Parse Evercode WT v3 | |
| Human breast cancer | Parse Evercode WT v3 | ||
| Seeker 10x10 Spatial Transcriptomics Kit | Human melanoma | n/a | |
| Mouse brain | |||
| Mouse embryo | |||
| Seeker 3x3 Spatial Transcriptomics Kit | Human breast cancer | ||
| Mouse hippocampus | |||
| Mouse liver | |||
| Mouse spleen |
Most data sets are outputs, not raw sequencing data. The files that include raw sequencing data are identified as (FASTQ).
To access these datasets generated with the Trekker and Seeker spatial kits, follow these steps:
- Sign up using the form below.
- You will receive an email containing a link to a confirmation page and an Access Code. Please save the email for future reference.
- Open the link in the email and enter the code to get access to the datasets page for a period of 24 hours. Bookmarking the datasets page will not extend access.
- If more than 24 hours have elapsed since you entered the access code and you wish to access the datasets again, go back to the original email and repeat step 3.
- If you have deleted the email, please submit the form again (Step 1).
Questions? Contact technical_support@takarabio.com
Get the datasets
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