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  • NucleoMag Blood
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Home › Learning centers › Nucleic acid purification › Genomic DNA purification › Blood and plasma › NucleoMag cfDNA

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Product overview

High-throughput isolation of cell-free DNA from plasma

The NucleoMag cfDNA kit is designed for the efficient isolation of circulating cell-free DNA (cfDNA) from human blood plasma. Fragmented DNA as small as 50 bp can be purified at high yield due to a reversible adsorption of nucleic acids to paramagnetic beads under specialized buffer conditions. The yield can vary depending on the sample and is typically in the range of 0.1 to 100 ng DNA per ml of plasma. The purification procedure takes less than an hour for 24 preps.

  • Consistent cfDNA recovery from 1–10 ml of plasma
  • Efficient purification of fragmented DNA as small as 50 bp
  • No PCR inhibition
  • Manual or high-throughput automated isolation of circulating cell-free DNA from human plasma using EDTA or Cell-Free DNA BCT tubes
  • Typical downstream applications: NGS, qPCR, ddPCR
At-a-glance Higher yield Highly consistent Expected yield Protocol schematic

At-a-glance  

Technology Magnetic bead technology
Format Highly reactive superparamagnetic beads
Processing Manual or automated
Starting material 1–10 ml human EDTA/Cell-Free DNA BCT plasma
Fragment size >50 bp
Typical yield Depends on sample source, storage, and quality
A260/A280 1.6–1.9
Elution volume 50-200 µl
Preparation time 55 min/24 preps (2 ml; excluding lysis)*
Binding capacity 0.3 µg/µl beads

 
* Using a KingFisher Flex

Higher yield  

Higher yields from low-abundance cfDNA samples.

Higher yields than a leading competitor from low-abundance cfDNA samples. Total cfDNA was purified from 2 ml of human EDTA plasma derived from four challenging donor samples known to have a low abundance of cfDNA (<10 ng cfDNA/ml plasma). Purification using the NucleoMag cfDNA kit resulted in higher and more consistent yields of total cfDNA compared to the competitor. The final total DNA recovery was quantified using the Qubit dsDNA High Sensitivity kit on a Qubit fluorometer (Thermo Fisher Scientific).

Highly consistent  

Consistent recovery of cfDNA regardless of plasma volume.

Consistent recovery of cell-free DNA regardless of plasma volume. cfDNA from human EDTA plasma isolated using the NucleoMag cfDNA kit shows clear bands when analyzed via capillary gel electrophoresis (using the Agilent Bioanalyzer 2100 system with the High Sensitivity DNA kit). cfDNA is clearly detectable, even when it is purified from small volumes of plasma.

Expected yield  

DNA yield ranges from 0.1 to 100 ng DNA per ml plasma.

DNA yield strongly depends on individual samples, but is typically in the range of 0.1 to 100 ng DNA per ml of plasma. The NucleoMag cfDNA kit was used to isolate cfDNA from human EDTA plasma samples ranging from 2–10 ml in volume. Efficient purification of cfDNA was indicated by the characteristic peak at approximately 170 bp (using the Agilent Bioanalyzer 2100 system and the High Sensitivity DNA kit). The total yield was determined by PicoGreen quantification assay using the Quant-iT PicoGreen kit (Thermo Fisher Scientific) on a Synergy HT Multi-detection microplate reader (Biotek). The consistent correlation of cfDNA amount and sample volume demonstrated reliable performance independent of sample volume.

Protocol schematic  

Protocol schematic

Related Products

Cat. # Product Size Price License Quantity Details


SMARTer ThruPLEX Plasma-seq

Cell-free DNA-seq library prep in under 2 hours

ThruPLEX Plasma-Seq Kit

  • Efficient library preparation from as little as 1 ng of cell-free DNA
  • Excellent complexity and GC representation
  • Three-step, single-tube protocol can be completed in less than 2 hours
  • UDIs or dual index options for multiplexing up to 384 samples

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